made updates folder copied blizzard updater and unzipped patch to updates folder
renamed sc2-13891-15976-x86-Win-enUS-game to sc2-patch.mpq ran updater did this for each file leaving the sc2-1.x.x.x-1606-x86-Win-enUS-tools file for last (if i did this before other ones it would delete my updates folder when it opened starcraft
Really easy
download the new blizzard updater
http://sc2.nibbits.com/assets/green-tea-ai-beta-test/files/320/get
or